Colletotrichum
Cordain Sturm, Deutschl. Fl., 3 Abt. (Pilze Deutschl.) 3: 41, tab. 21. 1831.
- Synonyms: Glomerella Spauld. & H. Schrenk, Science, N.Y. 17: 751. 1903. For additional synonyms see Sutton (1980).
- Classification: Sordariomycetes, Hypocreomycetidae, Glomerellales, Glomerellaceae.
- Type species: Colletotrichum lineola Corda. Holotype: PRM 155463. Epitype and ex-epitype culture: CBS H-20362, CBS 125337.
- DNA barcodes (genus): ITS.
- DNA barcodes (species): act, ApMat, apn2, cal, chs-1, gapdh, gs, his3, sod2, tub2.
Ascomata solitary or gregarious, globose to subglobose, dark brown to black, ostiole periphysate; ascomatal wall composed of pale to medium brown flattened cells of textura angularis. Hamathecium composed of hyaline, septate paraphyses, branched at the bases, rounded at the tips. Asci 8-spored, unitunicate, cylindrical to subfusoid, short pedicellate, with an inamyloid, refractive ring at the apex. Ascospores uni- to biseriate, aseptate, hyaline, smooth-walled, cylindrical, oval, fusiform or rhomboid, straight or curved, one end ± acute and one end rounded or both ends rounded. Conidiomata acervular, conidiophores and setae formed on cushions of pale to medium brown, roundish to angular cells, but very variable in culture, ranging from sporodochia-like aggregations of conidiophores directly on hyphae to closed conidiomata that open by rupture. Setae may or may not be present, straight, pale to dark brown, sometimes hyaline towards the tip, smooth-walled, verruculose to verrucose, 1–8-septate, base cylindrical, conical or slightly inflated, tip ± rounded to ± acute. Conidiophores hyaline to pale brown, simple or septate, branched or unbranched, smooth-walled, sometimes verruculose. Conidiogenous cells enteroblastic, hyaline to pale brown, smooth-walled, discrete, cylindrical, ellipsoidal, doliiform or ampulliform, collarette usually distinct, periclinal thickening visible to conspicuous, sometimes extending to form new conidiogenous loci (percurrent) or surrounded by a gelatinous coating. Conidia hyaline, smooth-walled, aseptate, cylindrical, clavate, fusiform, sometimes ellipsoidal to ovoid, straight or curved, apex rounded to acute, sometimes with a filiform appendage, base rounded to truncate, sometimes with a prominent hilum. Appressoria single or in small groups, pale to dark brown, with a globose, elliptical, clavate, navicular or irregular outline and an entire, undulate or lobate edge.
Culture characteristics:
Colonies on PDA flat, with an entire to irregular margin, grey to dark in centre, aerial mycelium, if present, sparse to cottony, white, buff or pale olivaceous green in colour. Reverse first white, with age turning grey to black, olivaceous green or smoke-grey, concentric rings can be observed. Conidia in mass orange, salmon, pink, white or pale grey. Colonies on SNA flat, with an entire, erose, dentate or undulate margin, aerial mycelium, if present, hyaline, white, honey colour, iron-grey, greenish black or dark olivaceous. Reverse hyaline, honey, pale olivaceous grey to iron-grey. Colonies on OA flat, with an entire to umbonate margin, aerial mycelium, if present, white, buff, rosy-buff, very pale glaucous, hyaline or honey coloured. Reverse buff, rosy-buff, flesh, pale luteous, honey coloured, smoke-grey or olivaceous grey. Conidia in mass salmon, saffron, orange, white or rosy-buff.
Optimal media and cultivation conditions: For morphological examinations of the asexual morphs SNA amended with double autoclaved stems of Anthriscus sylvestris (wild chervil) and autoclaved filter paper placed onto the agar surface and incubated under near-ultraviolet light with a 12 h photoperiod at 20 °C for 10 d proved to be best suited to promote sporulation of most of the species, while for other species, culturing on OA or PDA incubated under the same conditions is more suitable. Plates sometimes need to be incubated for 1–2 mo to allow development of the sexual morph.
Distribution:
Worldwide.
Hosts:
Occurs on a wide range of plant families.
Disease symptoms:
Anthracnose disease symptoms include defined, often sunken necrotic spots on leaves, stems, flowers or fruits. Additionally, crown and stem rots, ripe rot, seedling blights and brown blotch are caused by species of this genus.
Notes:
Due to the overlapping morphological characters, species delimitation based on morphology alone is hardly possible in Colletotrichum. Multilocus sequence analyses combined with a polyphasic approach including the analysis of geographical, ecological and morphological data is generally suggested for species differentiation within the genus Colletotrichum (Cai et al. 2009). This approach resulted in the differentiation of almost 200 species, most of them belonging to species complexes. As some studies started at the same time, different sets of loci are being used for different species complexes. ITS, gapdh, chs-1, act, his3 and tub2 (with some also gs or cal) gene regions have been used for studying species within the Col. acutatum, boninense, dematium, destructivum, gigasporum, orbiculare, spaethianum and truncatum species complexes (Cannon et al. 2012, Damm et al. 2012a, b, 2013, 2014, Liu et al. 2014, Jayawardena et al. 2016), while gs, cal and sod2 were additionally applied for the species separation within the Col. gloeosporioides species complex (Weir et al. 2012). In contrast, Crouch et al. (2009) and Crouch (2014) applied ITS, sod2, apn2 and Mat1/apn2 (= ApMat), to study the Col. graminicola and Col. caudatum species complexes. Silva et al. (2012) and Sharma et al. (2015) emphasised the use of ApMat in Colletotrichum species delimitation because of its high resolution within the Col. gloeosporioides species complex compared to previously used loci. Liu et al. (2015, 2016) applied different sets of loci and different phylogenetic methods on a large set of closely related Colletotrichum strains/species belonging to this complex and revealed that ApMat should be combined with other loci to achieve satisfactory species delimitation in the Col. gloeosporioides complex.
As different sets of loci are used in different species complexes and the resolution of species differs depending on both locus and species, there is no agreement among the mycologists on the locus or loci to use for species identification/barcoding. For example, most species in the Col. acutatum complex can be separated by tub2 sequences (Damm et al. 2012b), while species in the Col. gloeosporioides complex can be identified with a combination of ApMat and gs sequences (Liu et al. 2015). Research to select better genetic markers and the best secondary barcoding gene(s) is still ongoing.
References:
- Cannon et al. 2012 (species complexes); Crouch et al. 2009, Crouch 2014 (phylogeny); Damm et al. 2009, 2012a, b, 2013, 2014, Weir et al. 2012, Liu et al. 2014 (morphology, phylogeny).
- Cai L, Hyde KD, Taylor PWJ, et al. (2009). A polyphasic approach for studying Colletotrichum. Fungal Diversity 39: 183–204.
- Cannon PF, Damm U, Johnston PR, et al. (2012). Colletotrichum current status and future directions. Studies in Mycology 73: 181–213.
- Crouch JA (2014). Colletotrichum caudatum s. l. is a species complex. IMA Fungus 5: 1–30.
- Crouch JA, Clarke BB, White JF Jr, et al. (2009). Systematic analysis of the falcate-spored graminicolous Colletotrichum and a description of six new species from warm-season grasses. Mycologia 101: 717–732.
- Damm U, Cannon PF, Liu F, et al. (2013). The Colletotrichum orbiculare species complex: important pathogens of field and weeds. Fungal Diversity 61: 29–59.
- Damm U, Cannon PF, Woudenberg JHC, et al. (2012a). The Colletotrichum boninense species complex. Studies in Mycology 73: 1–36.
- Damm U, Cannon PF, Woudenberg JHC, et al. (2012b). The Colletotrichum acutatum species complex. Studies in Mycology 73: 37–113.
- Damm U, O'Connell RJ, Groenewald JZ, et al. (2014). The Colletotrichum destructivum species complex - hemibiotrophic pathogens of forage and field crops. Studies in Mycology 79: 49–84.
- Damm U, Woudenberg JHC, Cannon PF, et al. (2009). Colletotrichum species with curved conidia from herbaceous hosts. Fungal Diversity 39: 45–87.
- Jayawardena RS, Hyde KD, Damm U, et al. (2016) Notes on currently accepted species of Colletotrichum. Mycosphere 7: 1192–1260.
- Liu F, Cai L, Crous PW, et al. (2014). The Colletotrichum gigasporum species complex. Persoonia 33: 83–97.
- Liu F, Wang M, Damm U, et al. (2016). Species boundaries in plant pathogenic fungi: a Colletotrichum case study. BMC Evolutionary Biology 16: 81.
- Liu F, Weir BS, Damm U, et al. (2015). Unravelling Colletotrichum species associated with Camellia: employing ApMat and GS loci to resolve species in the C. gloeosporioides complex. Persoonia 35: 63–86.
- Sharma G, Kumar-Pinnaka A, Shenoy BD (2015). Resolving the Colletotrichum siamense species complex using ApMat marker. Fungal Diversity 71: 247–264.
- Silva DN, Talhinhas P, Varzea V, et al. (2012). Application of the Apn2/MAT locus to improve the systematics of the Colletotrichum gloeosporioides complex: an example from coffee (Coffea spp.) hosts. Mycologia 104: 396–409.
- Weir BS, Johnston PR, Damm U (2012). The Colletotrichum gloeosporioides species complex. Studies in Mycology 73: 115–180.
Table 6. DNA barcodes of accepted Colletotrichum spp. except for species in the C. graminicola and caudatum complexes.
|
|
||||||||||||
Species |
Isolates1 |
GenBank accession numbers2 |
References |
||||||||||
ITS |
gapdh |
chs-1 |
his3 |
act |
tub2 |
cal |
gs |
sod2 |
ApMat |
|
|||
Col. abscissum |
COAD 1877T |
KP843126 |
KP843129 |
KP843132 |
KP843138 |
KP843141 |
KP843135 |
- |
- |
- |
- |
Crous et al. (2015) |
|
Col. acerbum |
CBS 128530T |
JQ948459 |
JQ948790 |
JQ949120 |
JQ949450 |
JQ949780 |
JQ950110 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. acutatum |
CBS 112996T |
JQ005776 |
JQ948677 |
JQ005797 |
JQ005818 |
JQ005839 |
JQ005860 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. aenigma |
ICMP 18608T |
JX010244 |
JX010044 |
JX009774 |
- |
JX009443 |
JX010389 |
JX009683 |
JX010078 |
JX010311 |
KM360143 |
Weir et al. (2012) |
|
Col. aeschynomenes |
ICMP 17673T |
JX010176 |
JX009930 |
JX009799 |
- |
JX009483 |
JX010392 |
JX009721 |
JX010081 |
JX010314 |
- |
Weir et al. (2012) |
|
Col. agaves |
CBS 118190 |
DQ286221 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
Farr et al. (2006) |
|
Col. alatae |
ICMP 17919T |
JX010190 |
JX009990 |
JX009837 |
- |
JX009471 |
JX010383 |
JX009738 |
JX010065 |
JX010305 |
KC888932 |
Weir et al. (2012) |
|
Col. alienum |
ICMP 12071T |
JX010251 |
JX010028 |
JX009882 |
- |
JX009572 |
JX010411 |
JX009654 |
JX010101 |
JX010333 |
KM360144 |
Weir et al. (2012) |
|
Col. americae-borealis |
CBS 136232T |
KM105224 |
KM105579 |
KM105294 |
KM105364 |
KM105434 |
KM105504 |
- |
- |
- |
- |
Damm et al. (2014) |
|
Col. annellatum |
CBS 129826T |
JQ005222 |
JQ005309 |
JQ005396 |
JQ005483 |
JQ005570 |
JQ005656 |
JQ005743 |
- |
- |
- |
Damm et al. (2012a) |
|
Col. anthrisci |
CBS 125334T |
GU227845 |
GU228237 |
GU228335 |
GU228041 |
GU227943 |
GU228139 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. antirrhinicola |
CBS 102189T |
KM105180 |
KM105531 |
KM105250 |
KM105320 |
KM105390 |
KM105460 |
- |
- |
- |
- |
Damm et al. (2014) |
|
Col. aotearoa |
ICMP 18537T |
JX010205 |
JX010005 |
JX009853 |
- |
JX009564 |
JX010420 |
JX009611 |
JX010113 |
JX010345 |
KC888930 |
Weir et al. (2012), Sharma et al. (2015) |
|
Col. aracearum |
CGMCC 3.14983 T |
KX853167 |
KX893586 |
KX893578 |
KX893582 |
Hou et al. (2016), |
|||||||
Col. arxii |
CBS 132511T |
KF687716 |
KF687843 |
KF687780 |
KF687858 |
KF687802 |
KF687881 |
KF687819 |
KF687756 |
- |
- |
Liu et al. (2014) |
|
Col. asianum |
ICMP 18580T |
FJ972612 |
JX010053 |
JX009867 |
- |
JX009584 |
JX010406 |
FJ917506 |
JX010096 |
JX010328 |
FR718814 |
Prihastuti et al. (2009), Silva et al. (2012), Weir et al. (2012) |
|
Col. australe |
CBS 116478T |
JQ948455 |
JQ948786 |
JQ949116 |
JQ949446 |
JQ949776 |
JQ950106 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. beeveri |
CBS 128527T |
JQ005171 |
JQ005258 |
JQ005345 |
JQ005432 |
JQ005519 |
JQ005605 |
JQ005692 |
- |
- |
- |
Damm et al. (2012a) |
|
Col. bidentis |
COAD 1020T |
KF178481 |
KF178506 |
KF178530 |
KF178554 |
KF178578 |
KF178602 |
- |
KF178627 |
- |
- |
Damm et al. (2013) |
|
Col. bletillum |
CGMCC 3.15117T |
JX625178 |
KC843506 |
- |
- |
KC843542 |
JX625207 |
- |
- |
- |
- |
Tao et al. (2013) |
|
Col. boninense |
CBS 123755T |
JQ005153 |
JQ005240 |
JQ005327 |
JQ005414 |
JQ005501 |
JQ005588 |
JQ005674 |
- |
- |
- |
Damm et al. (2012a) |
|
Col. brasiliense |
CBS 128501T |
JQ005235 |
JQ005322 |
JQ005409 |
JQ005496 |
JQ005583 |
JQ005669 |
JQ005756 |
- |
- |
- |
Damm et al. (2012a) |
|
Col. brassicola |
CBS 101059T |
JQ005172 |
JQ005259 |
JQ005346 |
JQ005433 |
JQ005520 |
JQ005606 |
JQ005693 |
- |
- |
- |
Damm et al. (2012a) |
|
Col. brevisporum |
BCC 38876T |
JN050238 |
JN050227 |
KF687760 |
- |
JN050216 |
JN050244 |
- |
- |
- |
- |
Noireung et al. (2012) |
|
Col. brisbanense |
CBS 292.67T |
JQ948291 |
JQ948621 |
JQ948952 |
JQ949282 |
JQ949612 |
JQ949942 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. bryoniicola |
CBS 109849T |
KM105181 |
KM105532 |
KM105251 |
KM105321 |
KM105391 |
KM105461 |
- |
- |
- |
- |
Damm et al. (2014) |
|
Col. cairnsense |
BRIP 63642T |
KU923672 |
KU923704 |
KU923710 |
KU923722 |
KU923716 |
KU923688 |
- |
- |
- |
- |
De Silva et al. (2017) |
|
Col. camelliae |
CGMCC 3.14925T |
KJ955081 |
KJ954782 |
- |
- |
KJ954363 |
KJ955230 |
KJ954634 |
KJ954932 |
- |
KJ954497 |
Liu et al. (2015) |
|
Col. camelliae-japonicae |
CGMCC3.18118T |
KX853165 |
KX893584 |
KX893576 |
KX893580 |
Hou et al. (2016) |
|||||||
Col. carthami |
SAPA100011T |
AB696998 |
- |
- |
- |
- |
AB696992 |
- |
- |
- |
- |
Damm et al. (2012b), Uematsu et al. (2012) |
|
Col. changpingense |
MFLUCC 15-0022 |
KP683152 |
KP852469 |
KP852449 |
- |
KP683093 |
KP852490 |
- |
- |
- |
- |
Jayawardena et al. (2016) |
|
Col. chlorophyti |
IMI 103806T |
GU227894 |
GU228286 |
GU228384 |
GU228090 |
GU227992 |
GU228188 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. chrysanthemi |
SAPA100010 |
AB696999 |
AB696993 |
- |
- |
- |
- |
Uematsu et al. (2012), Damm et al. (2012b) |
|||||
Col. circinans |
CBS 221.81T |
GU227855 |
GU228247 |
GU228345 |
GU228051 |
GU227953 |
GU228149 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. citri |
CBS 134233T |
KC293581 |
KC293741 |
- |
- |
KC293621 |
KC293661 |
KC293701 |
KC293781 |
- |
- |
Huang et al. (2013) |
|
Col. citricola |
CBS 134228T |
KC293576 |
KC293736 |
KC293792 |
- |
KC293616 |
KC293656 |
KC293696 |
KC293776 |
- |
- |
Huang et al. (2013) |
|
Col. clidemiae |
ICMP 18658T |
JX010265 |
JX009989 |
JX009877 |
- |
JX009537 |
JX010438 |
JX009645 |
JX010129 |
JX010356 |
KC888929 |
Weir et al. (2012) |
|
Col. cliviae |
CBS 125375T |
GQ485607 |
GQ856756 |
GQ856722 |
JX560963 |
GQ856777 |
GQ849440 |
- |
- |
- |
- |
Yang et al. (2009), Cannon et al. (2012) |
|
Col. coccodes |
CBS 369.75T |
HM171679 |
HM171673 |
JX546681 |
JX546779 |
HM171667 |
JX546873 |
- |
- |
- |
- |
Liu et al. (2011, 2013a) |
|
Col. colombiense |
CBS 129818T |
JQ005174 |
JQ005261 |
JQ005348 |
JQ005435 |
JQ005522 |
JQ005608 |
JQ005695 |
- |
- |
- |
Damm et al. (2012a) |
|
Col. conoides |
CGMCC 3.17615T |
KP890168 |
KP890162 |
KP890156 |
KP890144 |
KP890174 |
KP890150 |
Diao et al. 2017 |
|||||
Col. constrictum |
CBS 128504T |
JQ005238 |
JQ005325 |
JQ005412 |
JQ005499 |
JQ005586 |
JQ005672 |
JQ005759 |
- |
- |
- |
Damm et al. (2012a) |
|
Col.cordylinicola |
ICMP 18579T |
JX010226 |
JX009975 |
JX009864 |
- |
HM470235 |
JX010440 |
HM470238 |
JX010122 |
JX010361 |
JQ899274 |
Weir et al. (2012) |
|
Col. cosmi |
CBS 853.73T |
JQ948274 |
JQ948604 |
JQ948935 |
JQ949265 |
JQ949595 |
JQ949925 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. costaricense |
CBS 330.75T |
JQ948180 |
JQ948510 |
JQ948841 |
JQ949171 |
JQ949501 |
JQ949831 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. curcumae |
IMI 288937T |
GU227893 |
GU228285 |
GU228383 |
GU228089 |
GU227991 |
GU228187 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. cuscutae |
IMI 304802T |
JQ948195 |
JQ948525 |
JQ948856 |
JQ949186 |
JQ949516 |
JQ949846 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. cymbidiicola |
IMI 347923T |
JQ005166 |
JQ005253 |
JQ005340 |
JQ005427 |
JQ005514 |
JQ005600 |
JQ005687 |
- |
- |
- |
Damm et al. (2012a) |
|
Col. dacrycarpi |
CBS 130241T |
JQ005236 |
JQ005323 |
JQ005410 |
JQ005497 |
JQ005584 |
JQ005670 |
JQ005757 |
- |
- |
- |
Damm et al. (2012a) |
|
Col. dematium |
CBS 125.25T |
GU227819 |
GU228211 |
GU228309 |
GU228015 |
GU227917 |
GU228113 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. destructivum |
CBS 136228T |
KM105207 |
KM105561 |
KM105277 |
KM105347 |
KM105417 |
KM105487 |
- |
- |
- |
- |
Damm et al. (2014) |
|
Col. dracaenophilum |
CBS 118199T |
DQ286209, JX519222 |
JX546707 |
JX519230 |
JX546756 |
JX519238 |
JX519247 |
- |
- |
- |
- |
Cannon et al. (2012), Farr et al. (2006) |
|
Col. endophytica |
MFLUCC 13–0418T |
KC633854 |
KC832854 |
- |
- |
KF306258 |
- |
KC810018 |
- |
- |
- |
Manamgoda et al. (2013) |
|
Col. euphorbiae |
CBS 134725T |
KF777146 |
KF777131 |
KF777128 |
KF777134 |
KF777125 |
KF777247 |
- |
- |
- |
- |
Crous et al. (2013) |
|
Col. excelsum-altitudum |
CGMCC 3.15130T |
HM751815 |
KC843502 |
- |
- |
KC843548 |
JX625211 |
- |
- |
- |
- |
Tao et al. (2013) |
|
Col. fioriniae |
CBS 128517T |
JQ948292 |
JQ948622 |
JQ948953 |
JQ949283 |
JQ949613 |
JQ949943 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. fructi |
CBS 346.37T |
GU227844 |
GU228236 |
GU228334 |
GU228040 |
GU227942 |
GU228138 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. fructicola |
ICMP 18581T |
JX010165 |
JX010033 |
JX009866 |
- |
FJ907426 |
JX010405 |
FJ917508 |
JX010095 |
JX010327 |
JQ807838 |
Weir et al. (2012) |
|
Col. fructivorum |
CBS 133125T |
JX145145 |
- |
- |
- |
- |
JX145196 |
- |
- |
- |
JX145300 |
Doyle et al. (2013) |
|
Col. fuscum |
CBS 133701T |
KM105174 |
KM105524 |
KM105244 |
KM105314 |
KM105384 |
KM105454 |
- |
- |
- |
- |
Damm et al. (2014) |
|
Col. fusiforme |
MFLUCC 12–0437T |
KT290266 |
KT290255 |
KT290253 |
- |
KT290251 |
KT290256 |
- |
- |
- |
- |
Ariyawansa et al. (2015) |
|
Col. gigasporum |
CBS 133266T |
AM982797, KF687715 |
KF687822 |
KF687761 |
KF687844 |
- |
FN557442, KF687866 |
- |
- |
- |
- |
Rakotoniriana et al. (2013), Liu et al. (2014) |
|
Col. gloeosporioides |
CBS 112999T |
JQ005152 |
JQ005239 |
JQ005326 |
JQ005413 |
JQ005500 |
JQ005587 |
JQ005673 |
JX010085 |
JX010365 |
JQ807843 |
Weir et al. (2012) |
|
Col. godetiae |
CBS 133.44T |
JQ948402 |
JQ948733 |
JQ949063 |
JQ949393 |
JQ949723 |
JQ950053 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. grevilleae |
CBS 132879T |
KC297078 |
KC297010 |
KC296987 |
KC297056 |
KC296941 |
KC297102 |
KC296963 |
KC297033 |
- |
- |
Liu et al. (2013b) |
|
Col. grossum |
CGMCC3.17614 T |
KP890165 |
KP890159 |
KP890153 |
KP890141 |
KP890171 |
KP890147 |
Diao et al. (2017) |
|||||
Col. guajavae |
IMI 350839T |
JQ948270 |
JQ948600 |
JQ948931 |
JQ949261 |
JQ949591 |
JQ949921 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. guizhouensis |
CGMCC 3.15112T |
JX625158 |
KC843507 |
- |
- |
KC843536 |
JX625185 |
- |
- |
- |
- |
Tao et al. (2013) |
|
Col. hebeiense |
MFLUCC13–0726T |
KF156863 |
KF377495 |
KF289008 |
- |
KF377532 |
KF288975 |
- |
- |
- |
- |
Yan et al. (2015) |
|
Col. hemerocallidis |
CBS 130642T |
JQ400005 |
JQ400012 |
JQ399998 |
- |
JQ399991 |
JQ400019 |
KJ781319 |
- |
- |
- |
Yang et al. (2012) |
|
Col. henanense |
CGMCC 3.17354T |
KJ955109 |
KJ954810 |
- |
- |
KM023257 |
KJ955257 |
KJ954662 |
KJ954960 |
- |
KJ954524 |
Liu et al. (2015) |
|
Col. higginsianum |
IMI 349061T |
KM105184 |
KM105535 |
KM105254 |
KM105324 |
KM105394 |
KM105464 |
- |
- |
- |
- |
Damm et al. (2014) |
|
Col. hippeastri |
CBS 125376T |
JQ005231 |
JQ005318 |
JQ005405 |
JQ005492 |
JQ005579 |
JQ005665 |
JQ005752 |
- |
- |
- |
Damm et al. (2012a) |
|
Col. horii |
ICMP 10492T |
GQ329690 |
GQ329681 |
JX009752 |
- |
JX009438 |
JX010450 |
JX009604 |
JX010137 |
JX010370 |
JQ807840 |
Weir et al. (2012) |
|
Col. hsienjenchang |
MAFF 243051 |
AB738855 |
- |
AB738846 |
AB738847 |
AB738845 |
- |
- |
- |
- |
- |
Sato et al. (2012) |
|
Col. hymenocallidicola |
MFLUCC 12–0531T |
KT290264 |
KT290263 |
KT290262 |
- |
KT290260 |
KT290261 |
- |
- |
- |
- |
Ariyawansa et al. (2015) |
|
Col. incanum |
ATCC 64682T |
KC110789 |
KC110807 |
- |
KC110798 |
KC110825 |
KC110816 |
- |
- |
- |
- |
Yang et al. (2014) |
|
Col. indonesiense |
CBS 127551T |
JQ948288 |
JQ948618 |
JQ948949 |
JQ949279 |
JQ949609 |
JQ949939 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. insertae |
MFLU 15–1895T |
KX618686 |
KX618684 |
KX618683 |
KX618682 |
KX618685 |
Hyde et al. (2016) |
||||||
Col. jiangxiense |
CGMCC 3.17363T |
KJ955201 |
KJ954902 |
- |
- |
KJ954471 |
KJ955348 |
KJ954752 |
KJ955051 |
- |
KJ954607 |
Liu et al. (2015) |
|
Col. johnstonii |
CBS 128532T |
JQ948444 |
JQ948775 |
JQ949105 |
JQ949435 |
JQ949765 |
JQ950095 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. kahawae subsp. kahawae |
ICMP 17816T |
JX010231 |
JX010012 |
JX009813 |
- |
JX009452 |
JX010444 |
JX009642 |
JX010130 |
JX010350 |
JQ894579 |
Weir et al. (2012) |
|
Col. kahawae subsp. ciggaro |
ICMP 18539T |
JX010230 |
JX009966 |
JX009800 |
|
JX009523 |
JX010434 |
JX009635 |
JX010132 |
JX010346 |
|
Weir et al. (2012) |
|
Col. karstii |
CBS 132134T |
HM585409 |
HM585391 |
HM582023 |
HM581995 |
HM585428 |
HM582013 |
- |
- |
- |
Yang et al. (2009) |
||
Col. kinghornii |
CBS 198.35T |
JQ948454 |
JQ948785 |
JQ949115 |
JQ949445 |
JQ949775 |
JQ950105 |
- |
- |
- |
- |
Damm et al. 2012b |
|
Col. lacticiphilum |
CBS 112989T |
JQ948289 |
JQ948619 |
JQ948950 |
JQ949280 |
JQ949610 |
JQ949940 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. ledebouriae |
CBS 141284T |
KX228254 |
- |
- |
KX228365 |
KX228357 |
- |
- |
- |
- |
- |
Crous et al. (2016) |
|
Col. lentis |
CBS 127604T |
JQ005766 |
KM105597 |
JQ005787 |
JQ005808 |
JQ005829 |
JQ005850 |
- |
- |
- |
- |
Damm et al. (2014) |
|
Col. liaoningense |
CGMCC3.17616 T |
KP890104 |
KP890135 |
KP890127 |
KP890097 |
KP890111 |
KP890119 |
Diao et al. (2017) |
|||||
Col. lilii |
CBS 109214 |
GU227810 |
GU228202 |
GU228300 |
GU228006 |
GU227908 |
GU228104 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. limetticola |
CBS 114.14T |
JQ948193 |
JQ948523 |
JQ948854 |
JQ949184 |
JQ949514 |
JQ949844 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. lindemuthianum |
CBS 144.31T |
JQ005779 |
JX546712 |
JQ005800 |
JQ005821 |
JQ005842 |
JQ005863 |
- |
KF178643 |
- |
- |
Damm et al. (2013), Liu et al. (2013a) |
|
Col. lineola |
CBS 125337T |
GU227829 |
GU228221 |
GU228319 |
GU228025 |
GU227927 |
GU228123 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. lini |
CBS 172.51T |
JQ005765 |
KM105581 |
JQ005786 |
JQ005807 |
JQ005828 |
JQ005849 |
- |
- |
- |
- |
Damm et al. (2014) |
|
Col. liriopes |
CBS 119444T |
GU227804 |
GU228196 |
GU228294 |
GU228000 |
GU227902 |
GU228098 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. lupini |
CBS 109225T |
JQ948155 |
JQ948485 |
JQ948816 |
JQ949146 |
JQ949476 |
JQ949806 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. magnisporum |
CBS 398.84T |
KF687718 |
KF687842 |
KF687782 |
KF687865 |
KF687803 |
KF687882 |
- |
KF687742 |
- |
- |
Liu et al. (2014) |
|
Col. malvarum |
CBS 521.97T |
KF178480 |
KF178504 |
KF178529 |
KF178553 |
KF178577 |
KF178601 |
- |
KF178626 |
- |
- |
Damm et al. (2013) |
|
Col. melonis |
CBS 159.84T |
JQ948194 |
JQ948524 |
JQ948855 |
JQ949185 |
JQ949515 |
JQ949845 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. menispermi |
MFLU 14–0625HT |
KU242357 |
KU242356 |
KU242355 |
- |
KU242353 |
KU242354 |
- |
- |
- |
- |
Li et al. (2016) |
|
Col. metake |
MAFF 244029 |
AB738859 |
(Sequences availabe at http://www.gene.affrc.go.jp/databases-micro_search_en.php) |
Sato et al. (2012) |
|||||||||
Col. musae |
ICMP 19119T |
JX010146 |
JX010050 |
JX009896 |
- |
JX009433 |
HQ596280 |
JX009742 |
JX010103 |
JX010335 |
KC888926 |
Weir et al. (2012) |
|
Col. neosansevieriae |
CBS 139918T |
KR476747 |
KR476791 |
- |
KR476792 |
KR476790 |
KR476797 |
- |
- |
- |
- |
Crous et al. (2015) |
|
Col. nigrum |
CBS 169.49T |
JX546838 |
JX546742 |
JX546693 |
JX546791 |
JX546646 |
JX546885 |
- |
- |
- |
- |
Liu et al. (2013a) |
|
Col. novae-zelandiae |
CBS 128505T |
JQ005228 |
JQ005315 |
JQ005402 |
JQ005489 |
JQ005576 |
JQ005662 |
JQ005749 |
- |
- |
- |
Damm et al. (2012a) |
|
Col. nupharicola |
ICMP 18187T |
JX010187 |
JX009972 |
JX009835 |
- |
JX009437 |
JX010398 |
JX009663 |
JX010088 |
JX010320 |
JX145319 |
Weir et al. (2012), Doyle et al. (2013) |
|
Col. nymphaeae |
CBS 515.78T |
JQ948197 |
JQ948527 |
JQ948858 |
JQ949188 |
JQ949518 |
JQ949848 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. ocimi |
CBS 298.94T |
KM105222 |
KM105577 |
KM105292 |
KM105362 |
KM105432 |
KM105502 |
- |
- |
- |
- |
Damm et al. (2014) |
|
Col. oncidii |
CBS 129828T |
JQ005169 |
JQ005256 |
JQ005343 |
JQ005430 |
JQ005517 |
JQ005603 |
JQ005690 |
- |
- |
- |
Damm et al. (2012a) |
|
Col. orbiculare |
CBS 570.97T |
KF178466 |
KF178490 |
KF178515 |
KF178539 |
KF178563 |
KF178587 |
- |
KF178611 |
- |
- |
Damm et al. (2013) |
|
Col. orchidophilum |
CBS 632.80T |
JQ948151 |
JQ948481 |
JQ948812 |
JQ949142 |
JQ949472 |
JQ949802 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. panacicola |
C08048 |
GU935867 |
GU935847 |
- |
- |
GU944757 |
- |
- |
GU935807 |
- |
- |
Choi et al. (2011) |
|
Col. paranaense |
CBS 134729T |
KC204992 |
KC205026 |
KC205043 |
KC205004 |
KC205077 |
KC205060 |
- |
- |
- |
- |
Bragança et al. (2016) |
|
Col. parsonsiae |
CBS 128525T |
JQ005233 |
JQ005320 |
JQ005407 |
JQ005494 |
JQ005581 |
JQ005667 |
JQ005754 |
- |
- |
- |
Damm et al. (2012a) |
|
Col. paxtonii |
IMI 165753T |
JQ948285 |
JQ948615 |
JQ948946 |
JQ949276 |
JQ949606 |
JQ949936 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. petchii |
CBS 378.94T |
JQ005223 |
JQ005310 |
JQ005397 |
JQ005484 |
JQ005571 |
JQ005657 |
JQ005744 |
- |
- |
- |
Damm et al. (2012b) |
|
Col. phormii |
CBS 118194T |
JQ948446 |
JQ948777 |
JQ949107 |
JQ949437 |
JQ949767 |
JQ950097 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. phyllanthi |
CBS 175.67T |
JQ005221 |
JQ005308 |
JQ005395 |
JQ005482 |
JQ005569 |
JQ005655 |
JQ005742 |
- |
- |
- |
Damm et al. (2012b) |
|
Col. pisicola |
CBS 724.97T |
KM105172 |
KM105522 |
KM105242 |
KM105312 |
KM105382 |
KM105452 |
- |
- |
- |
- |
Damm et al. (2014) |
|
Col. proteae |
CBS 132882T |
KC297079 |
KC297009 |
KC296986 |
KC297045 |
KC296940 |
KC297101 |
KC296960 |
- |
KC297032 |
- |
Liu et al. (2013b) |
|
Col. pseudoacutatum |
CBS 436.77T |
JQ948480 |
JQ948811 |
JQ949141 |
JQ949471 |
JQ949801 |
JQ950131 |
- |
- |
- |
- |
Damm et al. (2012) |
|
Col. pseudomajus |
CBS 571.88T |
KF687722 |
KF687826 |
KF687779 |
KF687864 |
KF687801 |
KF687883 |
KF687807 |
KF687744 |
- |
- |
Liu et al. (2014) |
|
Col. psidii |
ICMP 19120 |
JX010219 |
JX009967 |
JX009901 |
- |
JX009515 |
JX010443 |
JX009743 |
JX010133 |
JX010366 |
KC888931 |
Weir et al. (2012) |
|
Col. pyricola |
CBS 128531T |
JQ948445 |
JQ948776 |
JQ949106 |
JQ949436 |
JQ949766 |
JQ950096 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. queenslandicum |
ICMP 1778T |
JX010276 |
JX009934 |
JX009899 |
- |
JX009447 |
JX010414 |
JX009691 |
JX010104 |
JX010336 |
KC888928 |
Weir et al. (2012) |
|
Col. quinquefoliae |
MFLU 14–0626HT |
KU236391 |
KU236390 |
- |
- |
KU236389 |
KU236392 |
- |
- |
- |
- |
Li et al. (2016) |
|
Col. radicis |
CBS 529.93T |
KF687719 |
KF687825 |
KF687762 |
KF687847 |
KF687785 |
KF687869 |
KF687806 |
KF687743 |
- |
- |
Liu et al. (2014) |
|
Col. rhexiae |
CBS 133134T |
JX145128 |
- |
- |
- |
JX145179 |
- |
- |
- |
JX145290 |
Doyle et al. (2013) |
||
Col. rhombiforme |
CBS 129953T |
JQ948457 |
JQ948788 |
JQ949118 |
JQ949448 |
JQ949778 |
JQ950108 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. riograndense |
ICMP 20083T |
KM655299 |
KM655298 |
KM655297 |
- |
KM655295 |
KM65530 |
KM655296 |
- |
- |
- |
Macedo et al. (2016) |
|
Col. rusci |
CBS 119206T |
GU227818 |
GU228210 |
GU228308 |
GU228014 |
GU227916 |
GU228112 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. salicis |
CBS 607.94T |
JQ948460 |
JQ948791 |
JQ949121 |
JQ949451 |
JQ949781 |
JQ950111 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. salsolae |
ICMP 19051T |
JX010242 |
JX009916 |
JX009863 |
- |
JX009562 |
JX010403 |
JX009696 |
JX010093 |
JX010325 |
KC888925 |
Weir et al. (2012) |
|
Col. sansevieriae |
MAFF 239721T |
AB212991 |
(Sequences availabe at http://www.gene.affrc.go.jp/databases-micro_search_en.php) |
Nakamura et al. (2006) |
|||||||||
Col. scovillei |
CBS 126529T |
JQ948267 |
JQ948597 |
JQ948928 |
JQ949258 |
JQ949588 |
JQ949918 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. sedi |
MFLUCC 14–1002T |
KM974758; |
KM974755 |
KM974754 |
- |
KM974756 |
KM974757 |
- |
- |
- |
- |
Liu et al. (2015c) |
|
Col. siamense |
ICMP 18578T |
JX010171 |
JX009924 |
JX009865 |
- |
FJ907423 |
JX010404 |
FJ917505 |
JX010094 |
JX010326 |
JQ899289 |
Phoulivong et al. (2009), Weir et al. (2012) |
|
Col. sidae |
CBS 504.97T |
KF178472 |
KF178497 |
KF178521 |
KF178545 |
KF178569 |
KF178593 |
- |
KF178618 |
- |
- |
Damm et al. (2013) |
|
Col. simmondsii |
CBS 122122T |
JQ948276 |
JQ948606 |
JQ948937 |
JQ949267 |
JQ949597 |
JQ949927 |
FJ917510 |
FJ972591 |
- |
- |
Damm et al. (2012b), Prihastuti et al. (2009) |
|
Col. sloanei |
IMI 364297T |
JQ948287 |
JQ948617 |
JQ948948 |
JQ949278 |
JQ949608 |
JQ949938 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. spaethianum |
CBS 167.49T |
GU227807 |
GU228199 |
GU228297 |
GU228003 |
GU227905 |
GU228101 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. spinaceae |
CBS 128.57 |
GU227847 |
GU228239 |
GU228337 |
GU228043 |
GU227945 |
GU228141 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. spinosum |
CBS 515.97T |
KF178474 |
KF178498 |
KF178523 |
KF178547 |
KF178571 |
KF178595 |
- |
KF178620 |
- |
- |
Damm et al. (2013) |
|
Col. sydowii |
CBS 135819 T |
KY263783 |
KY263785 |
KY263787 |
KY263789 |
KY263791 |
KY263793 |
Marin-Felix et al. (2017) |
|||||
Col. syzygicola |
MFLUCC 10–0624T |
KF242094 |
KF242156 |
- |
- |
KF157801 |
KF254880 |
KF254859 |
KF242125 |
- |
- |
Udayanga et al. (2013) |
|
Col. tabacum |
CPC 18945T |
KM105204 |
KM105557 |
KM105274 |
KM105344 |
KM105414 |
KM105484 |
- |
- |
- |
- |
Damm et al. (2014) |
|
Col. tamarilloi |
CBS 129814T |
JQ948184 |
JQ948514 |
JQ948845 |
JQ949175 |
JQ949505 |
JQ949835 |
- |
- |
- |
- |
Damm et al. (2012a) |
|
Col. tanaceti |
CBS 132693T |
JX218228 |
JX218243 |
JX259268 |
- |
JX218238 |
JX218233 |
- |
- |
- |
- |
Barimani et al. (2013), Damm et al. (2014) |
|
Col. tebeestii |
CBS 522.97T |
KF178473 |
KF178505 |
KF178522 |
KF178546 |
KF178570 |
KF178594 |
- |
KF178619 |
- |
- |
Damm et al. (2014) |
|
Col. temperatum |
CBS 133122T |
JX145159 |
- |
- |
- |
- |
JX145211 |
- |
- |
- |
JX145298 |
Doyle et al. (2013) |
|
Col. theobromicola |
ICMP 18649T |
JX010294 |
JX010006 |
JX009869 |
- |
JX009444 |
JX010447 |
JX009591 |
JX010139 |
JX010372 |
KC790726 |
Weir et al. (2012) |
|
Col. ti |
ICMP 4832T |
JX010269 |
JX009952 |
JX009898 |
- |
JX009520 |
JX010442 |
JX009649 |
JX010123 |
JX010362 |
KM360146 |
Weir et al. (2012), Liu et al. (2015) |
|
Col. tofieldiae |
CBS 495.85 |
GU227801 |
GU228193 |
GU228291 |
GU227997 |
GU227899 |
GU228095 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. torulosum |
CBS 128544T |
JQ005164 |
JQ005251 |
JQ005338 |
JQ005425 |
JQ005512 |
JQ005512 |
JQ005512 |
- |
- |
- |
Damm et al. (2012a) |
|
Col. trichellum |
CBS 217.64 |
GU227812 |
GU228204 |
GU228302 |
GU228009 |
GU227910 |
GU228106 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. trifolii |
CBS 158.83T |
KF178478 |
KF178502 |
KF178527 |
KF178551 |
KF178575 |
KF178599 |
- |
KF178624 |
- |
- |
Damm et al. (2014) |
|
Col. tropicale |
ICMP 18653T |
JX010264 |
JX010007 |
JX009870 |
- |
JX009489 |
JX010407 |
JX009719 |
JX010097 |
JX010329 |
KC790728 |
Rojas et al. (2010), Weir et al. (2012) |
|
Col. tropicicola |
BCC 38877T |
JN050240 |
JN050229 |
- |
- |
JN050218 |
JN050246 |
- |
- |
- |
- |
Noireung et al. (2012) |
|
Col. truncatum |
CBS 151.35T |
GU227862 |
GU228254 |
GU228352 |
GU228058 |
GU227960 |
GU228156 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. utrechtense |
CBS 130243T |
KM105201 |
KM105554 |
KM105271 |
KM105341 |
KM105411 |
KM105481 |
- |
- |
- |
- |
Damm et al. (2014) |
|
Col. verruculosum |
IMI 45525T |
GU227806 |
GU228198 |
GU228296 |
GU228002 |
GU227904 |
GU228100 |
- |
- |
- |
- |
Damm et al. (2009) |
|
Col. vietnamense |
CBS 125478T |
KF687721 |
KF687832 |
KF687769 |
KF687855 |
KF687792 |
KF687877 |
KF687816 |
KF687753 |
- |
- |
Liu et al. (2014) |
|
Col. vignae |
CBS 501.97T |
KM105183 |
KM105534 |
KM105253 |
KM105323 |
KM105393 |
KM105463 |
- |
- |
- |
- |
Damm et al. (2014) |
|
Col. viniferum |
GZAAS 5.08601T |
JN412804 |
JN412798 |
- |
- |
JN412795 |
JN412813 |
JQ309639 |
JN412787 |
- |
- |
Peng et al. (2013), Hyde et al. (2014) |
|
Col. walleri |
CBS 125472T |
JQ948275 |
JQ948605 |
JQ948936 |
JQ949266 |
JQ949596 |
JQ949926 |
- |
- |
- |
- |
Damm et al. (2012b) |
|
Col. wuxiense |
CGMCC 3.17894T |
KU251591 |
KU252045 |
KU251939 |
- |
KU251672 |
KU252200 |
KU251833 |
KU252101 |
- |
KU251722 |
Wang et al. 2016 |
|
Col. xanthorrhoeae |
ICMP 17903T |
JX010261 |
JX009927 |
JX009823 |
- |
JX009478 |
JX010448 |
JX009653 |
JX010138 |
JX010369 |
KC790689 |
Shivas et al. (1998), Weir et al. (2012) |
|
Col. yunnanense |
CBS 132135T |
EF369490, JX546804 |
JX546706 |
JX519231 |
JX546755 |
JX519239 |
JX519248 |
- |
- |
- |
- |
Liu et al. (2007), Cannon et al. (2012) |
|
1ATCC: American Type Culture Collection, Virginia, USA; BCC: BIOTEC Culture Collection, National Center for Genetic Engineering and Biotechnology (BIOTEC), Khlong Luang, Pathumthani, Thailand; BRIP: Queensland Plant Pathology Herbarium, Brisbane, Australia; CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, the Netherlands; CGMCC: Chinese General Microbiological Culture Collection Center, Beijing, China; COAD: Coleção Octávio Almeida Drummond, Universidade Ferderal de Viçosa, Viçosa, Brazil; CPC: Culture collection of Pedro Crous, housed at Westerdijk Fungal Biodiversity Institute; GZAAS: Guizhou Academy of Agricultural Sciences, Guizhou Province, China. ICMP: International Collection of Micro-organisms from Plants, Landcare Research, Private Bag 92170, Auckland, New Zealand; IMI: International Mycological Institute, Kew, UK; MAFF: Ministry of Agriculture, Forestry and Fisheries, Tsukuba, Ibaraki, Japan; MFLU: Herbarium of Mae Fah Luang University, Chiang Rai, Thailand; MFLUCC: Mae Fah Luang University Culture Collection, Chiang Ria, Thailand. HT and T indicates holotype specimens and ex-type strains, respectively.
2ITS: internal transcribed spacers and intervening 5.8S nrDNA; gapdh: partial glyceraldehyde-3-phosphate dehydrogenase gene; chs-1: partial chitin synthase-1 gene; his: partial histone H3 gene; act: partial actin gene; tub2: partial beta-tubulin gene; cal: partial calmodulin gene; gs: partial glutamine synthetase gene; sod2: partial manganese superoxide dismutase gene; ApMat: partial Apn2-Mat1-2 intergenic spacer and partial mating type (Mat1-2) gene.
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